Basic Information
Locus ID:
Zosma03g23160.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 31313457 | 31321257 | + | Zosma03g23160.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 131,023.51 Da | 43.04 | 82.86 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 962 | 994 | 0.031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 500 | 538 | 1.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 882 | 1141 | 3.43E-33 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 397 | 713 | 1.14E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 876 | 1159 | 2.9E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 329 | 592 | 2.0E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 593 | 739 | 1.3E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1047 | 1088 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 913 | 953 | 2.0 | IPR001680 |
| SMART | SM00667 | Lish | 53 | 85 | 1.7E-4 | IPR006594 |
| SMART | SM00668 | ctlh | 83 | 141 | 4.5E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 497 | 538 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 873 | 910 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 491 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 956 | 995 | 4.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 391 | 430 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 631 | 671 | 9.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 628 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 541 | 582 | 0.14 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 504 | 538 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 963 | 994 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 963 | 994 | 9.889235 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 53 | 85 | 9.974554 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 83 | 141 | 13.520018 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1151 | 1178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1142 | 1178 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_038988989.1 | protein TPR3 [Phoenix dactylifera] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PM82 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology