Basic Information
Locus ID:
Zosma03g22170.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Transcription factor ABORTED
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 30774630 | 30776323 | + | Zosma03g22170.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 49,502.90 Da | 60.67 | 74.89 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 241 | 285 | 8.4E-9 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 235 | 307 | 5.5E-17 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 226 | 301 | 1.3E-15 | IPR036638 |
| SMART | SM00353 | finulus | 242 | 291 | 4.7E-13 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 236 | 285 | 15.522795 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 225 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00040 (Pentose and glucuronate interconversions)
map00040 (Pentose and glucuronate interconversions)
ko00053 (Ascorbate and aldarate metabolism)
map00053 (Ascorbate and aldarate metabolism)
ko00520 (Amino sugar and nucleotide sugar metabolism)
map00520 (Amino sugar and nucleotide sugar metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12860.1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein. Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation. | 0 |
| RefSeq | XP_017625730.1 | PREDICTED: transcription factor ICE1-like [Gossypium arboreum] | 0 |
| Q9LPW3 | Transcription factor SCREAM2 OS=Arabidopsis thaliana OX=3702 GN=SCRM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NRI2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology