Basic Information
Locus ID:
Zosma03g21870.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 30483065 | 30506800 | + | Zosma03g21870.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 66,748.39 Da | 58.69 | 55.56 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 134 | 184 | 2.59916E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 203 | 265 | 2.4E-14 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 282 | 330 | 1.4E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 130 | 212 | 1.11E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 332 | 4.35E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 272 | 9.32E-12 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 554 | 583 | 4.8E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 261 | 516 | 2.9E-86 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 215 | 6.3E-17 | IPR013083 |
| SMART | SM00547 | zf_4 | 558 | 582 | 6.1E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 203 | 265 | 4.3E-20 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 269 | 339 | 0.036 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 553 | 583 | 8.569291 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 178 | 9.184606 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 130 | 343 | 48.774979 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 560 | 579 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 550 | - | - |
| Coils | Coil | Coil | 344 | 371 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010912800.1 | probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Elaeis guineensis] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PYC8 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology