Basic Information
Locus ID:
Zosma03g21400.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
prolyl 4-hydroxylase 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 30190523 | 30195243 | - | Zosma03g21400.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 59,913.69 Da | 42.01 | 90.11 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 498 | 541 | 2.33687E-18 | - |
| Pfam | PF13639 | Ring finger domain | 499 | 541 | 8.1E-10 | IPR001841 |
| Pfam | PF13640 | 2OG-Fe(II) oxygenase superfamily | 175 | 293 | 2.2E-19 | IPR044862 |
| SUPERFAMILY | SSF57850 | RING/U-box | 481 | 543 | 5.18E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 462 | 544 | 2.2E-20 | IPR013083 |
| Gene3D | G3DSA:2.60.120.620 | q2cbj1_9rhob like domain | 88 | 294 | 7.8E-79 | - |
| SMART | SM00184 | ring_2 | 499 | 540 | 3.6E-6 | IPR001841 |
| SMART | SM00702 | p4hc | 95 | 294 | 8.3E-65 | IPR006620 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 499 | 541 | 12.076194 | IPR001841 |
| ProSiteProfiles | PS51471 | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 171 | 295 | 11.337932 | IPR005123 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20270.1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein. | 0 |
| RefSeq | XP_020241695.1 | probable prolyl 4-hydroxylase 3 [Asparagus officinalis] | 0 |
| Q9LN20 | Probable prolyl 4-hydroxylase 3 OS=Arabidopsis thaliana OX=3702 GN=P4H3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PJW0 | Putative Prolyl 4-hydroxylase alpha subunit OS=Zostera marina OX=29655 GN=ZOSMA_21G01000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology