Basic Information
Locus ID:
Zosma03g20620.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Short Name:
RCK
Description:
ATP-dependent DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 29634957 | 29696065 | + | Zosma03g20620.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 167,889.20 Da | 46.07 | 89.11 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18795 | SF2_C_Ski2 | 586 | 766 | 1.64138E-49 | - |
| CDD | cd01488 | Uba3_RUB | 48 | 343 | 0.0 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 404 | 583 | 5.6E-22 | IPR011545 |
| Pfam | PF00899 | ThiF family | 45 | 334 | 2.9E-67 | IPR000594 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 603 | 752 | 1.5E-7 | IPR001650 |
| Pfam | PF02889 | Sec63 Brl domain | 875 | 1186 | 9.7E-43 | IPR004179 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 47 | 345 | 4.71E-97 | IPR035985 |
| SUPERFAMILY | SSF158702 | Sec63 N-terminal domain-like | 903 | 1088 | 6.54E-30 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 404 | 768 | 3.25E-41 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 784 | 870 | 2.9E-24 | IPR036388 |
| Gene3D | G3DSA:1.10.150.20 | - | 1033 | 1078 | 1.0E-5 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 45 | 347 | 8.8E-65 | - |
| Gene3D | G3DSA:1.10.3380.10 | - | 877 | 1028 | 4.9E-32 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 383 | 585 | 1.6E-65 | IPR027417 |
| Gene3D | G3DSA:1.10.10.520 | Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 | 215 | 283 | 8.0E-32 | IPR023318 |
| Gene3D | G3DSA:3.40.50.300 | - | 586 | 777 | 9.1E-62 | IPR027417 |
| SMART | SM00490 | helicmild6 | 666 | 754 | 1.7E-10 | IPR001650 |
| SMART | SM00973 | Sec63_2 | 873 | 1190 | 1.5E-42 | IPR004179 |
| SMART | SM00487 | ultradead3 | 388 | 606 | 1.1E-20 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 401 | 596 | 18.984499 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 598 | 799 | 13.003609 | IPR001650 |
| ProSitePatterns | PS00865 | Ubiquitin-activating enzyme active site. | 213 | 221 | - | IPR033127 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1340 | 1375 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27730.1 | ATP binding;ATP-dependent helicases;DNA helicases. DNA helicase required for interference-sensitive meiotic crossover events. | 0 |
| RefSeq | XP_038979014.1 | ATP-dependent DNA helicase MER3 homolog [Phoenix dactylifera] | 0 |
| B6DMK2 | ATP-dependent DNA helicase MER3 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=MER3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PM08 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34978 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17001 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035312 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g023810 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21423, Sbi_jg22432 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16312 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016449 |
| Amaranthaceae | Suaeda glauca | 11 | Sgl62864, Sgl62865, Sgl62867, Sgl62871, Sgl62873, Sgl62906 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020046, gene:ENSEOMG00000050620 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0019780, CQ.Regalona.r1.2AG0021500 |
| Apiaceae | Apium graveolens | 1 | Ag9G00461 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G011010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120103745 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2666.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G15993 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G27730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003551m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16840.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g007140.2N, BniB07g047820.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1858 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1938 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g18880 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0006s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g34300 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.324 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027856 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G22475, Lb4G25190 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2621, BH07.2433, CH07.2502 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0193160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0378290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068091 |
| Poaceae | Oryza coarctata | 4 | Oco03G015380, Oco04G016020, Oco12G006860, Oco18G001190 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G198100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102655, Pt_Chr0107913 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G015500, Chr15G009160 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G307400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG018550, gene_TRIDC4BG030700 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G136200.1, TraesCS4B02G168700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb184840_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-9475, nbis-gene-9476 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13901 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.Contig33.4 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g38670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1906 |
| Rhizophoraceae | Carallia pectinifolia | 8 | nbisL1-mrna-2353, nbisL1-mrna-2360, nbisL1-mrna-2363 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12371 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3075 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.76 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001796, Maker00002279 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12048 |
| Salicaceae | Populus euphratica | 1 | populus_peu01053 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132624766 |
| Solanaceae | Solanum chilense | 1 | SOLCI001040600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010152 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13837 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3595 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20620.v3.1 |