Basic Information
Locus ID:
Zosma03g20430.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 29503378 | 29506959 | - | Zosma03g20430.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 105,580.92 Da | 62.15 | 52.32 | -1.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 386 | 413 | 3.3E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 352 | 380 | 2.5E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 345 | 381 | 9.81E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 383 | 415 | 4.5E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 344 | 382 | 3.0E-15 | - |
| SMART | SM00547 | zf_4 | 354 | 378 | 4.0E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 387 | 411 | 0.047 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 352 | 381 | 9.924355 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 385 | 414 | 9.472667 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 356 | 375 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 389 | 408 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 802 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 809 | 824 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 647 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 924 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 603 | 646 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 872 | 924 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 536 | - | - |
| Coils | Coil | Coil | 85 | 105 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_008777783.2 | uncharacterized protein LOC103697653 [Phoenix dactylifera] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PVB6 | Zinc finger protein VAR3, chloroplastic OS=Zostera marina OX=29655 GN=ZOSMA_156G00350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology