Basic Information
Locus ID:
Zosma03g15620.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 25924273 | 26051619 | - | Zosma03g15620.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 459,362.94 Da | 42.72 | 93.06 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2615 | 2727 | 9.38631E-6 | - |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2226 | 2365 | 2.6E-10 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 140 | 382 | 1.6E-63 | IPR031646 |
| Pfam | PF00168 | C2 domain | 2613 | 2722 | 1.4E-5 | IPR000008 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 573 | 797 | 1.6E-31 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1974 | 2186 | 1.2E-15 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3117 | 3419 | 1.2E-16 | IPR009543 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 5.3E-30 | IPR026854 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2612 | 2728 | 4.91E-7 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2597 | 2755 | 9.1E-7 | IPR035892 |
| SMART | SM00239 | C2_3c | 2612 | 2731 | 6.4E-4 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2590 | 2733 | 9.697319 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1168 | 1189 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_038986982.1 | uncharacterized protein LOC103722332 isoform X1 [Phoenix dactylifera] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9NNI7 | C2 domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_79G00090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology