Basic Information
Locus ID:
Zosma03g15410.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Short Name:
CMT1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 25662297 | 25668077 | - | Zosma03g15410.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 99,575.59 Da | 44.18 | 77.65 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 431 | 487 | 2.64584E-28 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 497 | 855 | 3.4E-34 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 432 | 487 | 3.2E-11 | IPR023780 |
| Pfam | PF01426 | BAH domain | 178 | 292 | 2.4E-9 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 330 | 855 | 1.87E-76 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 421 | 488 | 3.53E-12 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 331 | 872 | 2.0E-236 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 114 | 280 | 1.7E-43 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 650 | 820 | 2.0E-236 | - |
| SMART | SM00298 | chromo_7 | 431 | 490 | 5.8E-10 | IPR000953 |
| SMART | SM00439 | BAH_4 | 176 | 295 | 3.4E-15 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 499 | 851 | 1.4E-29 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 329 | 861 | 47.557289 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 432 | 487 | 11.942101 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 176 | 295 | 17.369896 | IPR001025 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 455 | 475 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 502 | 514 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 591 | 604 | 1.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 545 | 559 | 1.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 330 | 346 | 1.8E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 94 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_010936992.1 | DNA (cytosine-5)-methyltransferase CMT3 [Elaeis guineensis] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NQG1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology