Basic Information
Locus ID:
Zosma03g12500.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 22938243 | 22939687 | - | Zosma03g12500.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 28,232.43 Da | 30.50 | 95.79 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 52 | 81 | 0.018 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 206 | 7.2E-16 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 226 | 256 | 6.0E-7 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 260 | 3.11E-42 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 150 | 5.8E-30 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 174 | 263 | 2.5E-19 | IPR036770 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0044 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 0.0028 | IPR002110 |
| SMART | SM00248 | ANK_2a | 225 | 254 | 7.9E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 0.71 | IPR002110 |
| SMART | SM00248 | ANK_2a | 182 | 211 | 3.5E-4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.065006 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 182 | 214 | 11.51418 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 182 | 206 | 10.975266 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 10.44578 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 10.4977 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.08357 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 225 | 257 | 13.00994 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 225 | 256 | 11.797739 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 9.356852 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 11.70115 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 241 | 255 | 1.7E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 183 | 198 | 1.7E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_009390527.1 | - | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9P4Y2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology