Basic Information
Locus ID:
Zosma03g09310.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 9455891 | 9461936 | + | Zosma03g09310.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 47,442.17 Da | 51.78 | 78.08 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15466 | CLU-central | 285 | 405 | 9.66332E-26 | IPR033646 |
| CDD | cd00121 | MATH | 58 | 100 | 2.28489E-4 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 86 | 163 | 1.3E-9 | IPR001394 |
| Pfam | PF12807 | Translation initiation factor eIF3 subunit 135 | 283 | 368 | 9.8E-14 | IPR033646 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 85 | 193 | 1.16E-19 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 54 | 89 | 9.37E-6 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 73 | 167 | 3.6E-16 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 166 | 11.17775 | IPR028889 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 56 | - | - |
| Coils | Coil | Coil | 182 | 202 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.3 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010534918.1 | - | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9NN95 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000046578 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr22G004350 |
| Zosteraceae | Zostera marina | 1 | Zosma03g09310.v3.1 |