Basic Information
Locus ID:
Zosma03g06920.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 5049547 | 5055264 | + | Zosma03g06920.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 81,530.82 Da | 46.16 | 87.20 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 25 | 226 | 4.40827E-102 | - |
| CDD | cd18794 | SF2_C_RecQ | 227 | 360 | 6.27632E-62 | - |
| Pfam | PF16124 | RecQ zinc-binding | 363 | 435 | 1.0E-11 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 247 | 349 | 1.1E-16 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 205 | 4.3E-19 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 76 | 371 | 8.4E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 227 | 454 | 7.3E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 6 | 226 | 1.7E-84 | IPR027417 |
| SMART | SM00490 | helicmild6 | 270 | 351 | 4.1E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 33 | 235 | 5.2E-30 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 26 | 444 | 2.8E-143 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 219 | 21.977301 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 396 | 18.834488 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 729 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 715 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_010917457.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Elaeis guineensis] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PZQ0 | ATP-dependent DNA helicase OS=Zostera marina OX=29655 GN=ZOSMA_144G00260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology