Basic Information
Locus ID:
Zosma03g05950.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 4161140 | 4162258 | - | Zosma03g05950.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 41,003.37 Da | 63.52 | 78.84 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 111 | 154 | 1.77573E-16 | - |
| Pfam | PF13639 | Ring finger domain | 111 | 154 | 5.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 106 | 159 | 1.03E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 161 | 2.4E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 112 | 153 | 3.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 112 | 154 | 12.54829 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 228 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_042443140.1 | - | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9PZU0 | E3 ubiquitin-protein ligase, ATL family OS=Zostera marina OX=29655 GN=ZOSMA_125G00460 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology