Basic Information
Locus ID:
Zosma03g05030.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 3500667 | 3504455 | + | Zosma03g05030.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 55,537.43 Da | 35.51 | 103.78 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 5 | 48 | 4.9E-7 | IPR001810 |
| Pfam | PF00646 | F-box domain | 232 | 276 | 9.0E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 62 | 3.79E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 64 | 439 | 2.75E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 226 | 285 | 4.32E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 49 | 1.6E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 233 | 278 | 3.5E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 302 | 467 | 7.0E-7 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 72 | 232 | 4.8E-9 | IPR032675 |
| SMART | SM00256 | fbox_2 | 236 | 277 | 0.63 | IPR001810 |
| SMART | SM00256 | fbox_2 | 7 | 48 | 0.029 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 48 | 11.961449 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 230 | 277 | 11.564033 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_050145014.1 | - | 0 |
| TrEMBL | A0A0K9Q376 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Zosteraceae | Zostera marina | 7 | Zosma03g00800.v3.1, Zosma03g05030.v3.1, Zosma03g05040.v3.1 ... |