Basic Information
Locus ID:
Zosma03g03610.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 2462188 | 2462673 | + | Zosma03g03610.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.53 | 17,715.83 Da | 36.30 | 83.04 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 90 | 151 | 7.07123E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 89 | 151 | 2.6E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 14 | 73 | 2.6E-9 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 12 | 151 | 1.37E-38 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 11 | 83 | 4.4E-16 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 84 | 158 | 9.4E-22 | - |
| SMART | SM00054 | efh_1 | 126 | 154 | 3.3E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 15 | 43 | 0.14 | IPR002048 |
| SMART | SM00054 | efh_1 | 51 | 79 | 2.8 | IPR002048 |
| SMART | SM00054 | efh_1 | 90 | 118 | 9.6E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 86 | 121 | 14.401823 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 47 | 82 | 9.520128 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 122 | 157 | 12.7281 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 11 | 46 | 12.05861 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 135 | 147 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 60 | 72 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 99 | 111 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 24 | 36 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_047306260.1 | - | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9PNE0 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology