Basic Information
Locus ID:
Zosma03g02500.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Belongs to the MT-A70-like family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 1856622 | 1861427 | + | Zosma03g02500.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 89,014.10 Da | 37.03 | 87.11 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 530 | 798 | 3.35304E-67 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 531 | 769 | 6.3E-56 | IPR000092 |
| Pfam | PF05063 | MT-A70 | 243 | 413 | 3.9E-30 | IPR007757 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 507 | 778 | 9.25E-85 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 498 | 800 | 7.8E-102 | IPR008949 |
| ProSiteProfiles | PS51143 | MT-A70-like family profile. | 201 | 433 | 21.454416 | IPR007757 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 718 | 730 | - | IPR033749 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 583 | 599 | - | IPR033749 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 109 | - | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 508 | 798 | 0.0 | - |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 508 | 798 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_010943156.1 | methyltransferase-like protein 2 isoform X2 [Elaeis guineensis] | 0 |
| Q94ID7 | Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=3981 GN=GGPS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NMU7 | Methyltransferase-like protein 2 OS=Zostera marina OX=29655 GN=ZOSMA_86G00370 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology