Basic Information
Locus ID:
Zosma03g01760.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Short Name:
DCL4
Description:
Belongs to the helicase family. Dicer subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 1287991 | 1378826 | - | Zosma03g01760.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 206,591.41 Da | 45.88 | 100.94 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00593 | RIBOc | 1183 | 1319 | 2.0975E-35 | IPR000999 |
| CDD | cd00593 | RIBOc | 987 | 1135 | 2.16973E-28 | IPR000999 |
| CDD | cd18034 | DEXHc_dicer | 19 | 216 | 8.62787E-72 | - |
| Pfam | PF00636 | Ribonuclease III domain | 1201 | 1309 | 2.1E-22 | IPR000999 |
| Pfam | PF14709 | double strand RNA binding domain from DEAD END PROTEIN 1 | 1478 | 1551 | 1.9E-10 | - |
| Pfam | PF00902 | Sec-independent protein translocase protein (TatC) | 1592 | 1800 | 3.5E-57 | IPR002033 |
| Pfam | PF03368 | Dicer dimerisation domain | 539 | 623 | 1.1E-24 | - |
| Pfam | PF00636 | Ribonuclease III domain | 1002 | 1125 | 7.2E-22 | IPR000999 |
| Pfam | PF02170 | PAZ domain | 830 | 958 | 3.2E-8 | IPR003100 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 23 | 186 | 5.9E-14 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 357 | 472 | 6.7E-18 | IPR001650 |
| SUPERFAMILY | SSF69065 | RNase III domain-like | 1165 | 1325 | 4.71E-36 | IPR036389 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 1476 | 1553 | 5.29E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 69 | 492 | 5.59E-37 | IPR027417 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 1291 | 1403 | 9.1E-8 | - |
| SUPERFAMILY | SSF69065 | RNase III domain-like | 983 | 1140 | 2.62E-31 | IPR036389 |
| Gene3D | G3DSA:2.170.260.10 | paz domain | 828 | 935 | 1.0E-11 | - |
| Gene3D | G3DSA:1.10.1520.10 | Ribonuclease III domain | 977 | 1137 | 2.2E-39 | IPR036389 |
| Gene3D | G3DSA:3.30.160.20 | - | 1485 | 1553 | 1.9E-15 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 349 | 510 | 8.7E-37 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 21 | 279 | 1.5E-59 | IPR027417 |
| Gene3D | G3DSA:3.30.160.380 | Dicer dimerisation domain | 535 | 632 | 3.1E-27 | IPR038248 |
| Gene3D | G3DSA:3.30.160.20 | - | 1331 | 1408 | 1.0E-5 | - |
| Gene3D | G3DSA:1.10.1520.10 | Ribonuclease III domain | 1163 | 1330 | 8.2E-50 | IPR036389 |
| SMART | SM00358 | DRBM_3 | 1339 | 1404 | 2.1 | IPR014720 |
| SMART | SM00487 | ultradead3 | 17 | 223 | 1.1E-16 | IPR014001 |
| SMART | SM00358 | DRBM_3 | 1478 | 1552 | 0.0014 | IPR014720 |
| SMART | SM00535 | riboneu5 | 984 | 1146 | 1.0E-20 | IPR000999 |
| SMART | SM00535 | riboneu5 | 1181 | 1332 | 3.0E-28 | IPR000999 |
| SMART | SM00949 | PAZ_2_a_3 | 811 | 963 | 4.8E-5 | IPR003100 |
| SMART | SM00490 | helicmild6 | 387 | 475 | 2.9E-10 | IPR001650 |
| TIGRFAM | TIGR00945 | tatC: twin arginine-targeting protein translocase TatC | 1590 | 1805 | 4.6E-78 | IPR002033 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 363 | 516 | 15.214462 | IPR001650 |
| ProSiteProfiles | PS50821 | PAZ domain profile. | 864 | 937 | 10.3736 | IPR003100 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 28 | 187 | 17.123428 | IPR014001 |
| ProSiteProfiles | PS50142 | Ribonuclease III family domain profile. | 1166 | 1309 | 35.219666 | IPR000999 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 1338 | 1405 | 8.566698 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 1477 | 1553 | 8.542421 | IPR014720 |
| ProSiteProfiles | PS50142 | Ribonuclease III family domain profile. | 988 | 1125 | 23.885422 | IPR000999 |
| ProSiteProfiles | PS51327 | Dicer double-stranded RNA-binding fold domain profile. | 539 | 629 | 29.367241 | IPR005034 |
| ProSitePatterns | PS00517 | Ribonuclease III family signature. | 1201 | 1209 | - | IPR000999 |
| ProSitePatterns | PS01218 | TatC family signature. | 1732 | 1751 | - | IPR019820 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 1681 | 1707 | 4.5E-37 | IPR002033 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 1589 | 1616 | 4.5E-37 | IPR002033 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 1732 | 1760 | 4.5E-37 | IPR002033 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 1663 | 1681 | 4.5E-37 | IPR002033 |
| Hamap | MF_00902 | Sec-independent protein translocase protein TatC [tatC]. | 1502 | 1817 | 16.000923 | IPR002033 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20320.1 | dicer-like 4. Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein. | 0 |
| RefSeq | XP_020265695.1 | endoribonuclease Dicer homolog 4-like isoform X1 [Asparagus officinalis] | 0 |
| A7LFZ6 | Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9P0F5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5212, jg7294, jg9115 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4090 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025502 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g143080 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg12881, Sbi_jg36217, Sbi_jg52990 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4311, Seu_jg8868 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00021462, GOSA_00022145, GOSA_00024757 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl25377, Sgl30556, Sgl33047, Sgl38283 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000512, gene:ENSEOMG00000002990 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013460, CQ.Regalona.r1.6BG0014020 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30215990 |
| Apiaceae | Apium graveolens | 2 | Ag1G01604, Ag6G00536 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G005480 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705632, gene-LOC103715160 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3194.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G08938, Ftri13G24304, Ftri18G24265 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G01110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000946m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g12580.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g064510.2N, BniB04g009920.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2068 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2268 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g14340, gene.Cymno11g02270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0450s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00150 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.Contig10.11, evm.TU.Contig10.5, evm.TU.LG03.1469 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019106 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13258, Lb2G13263 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.4263, BH02.4295, BH04.1859, CH02.4335 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0018590, gene-QOZ80_1BG0068580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0261530.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046000 |
| Poaceae | Oryza coarctata | 2 | Oco01G010820, Oco02G011740 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g31680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G226500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301535, Pt_Chr0301555 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G012930, Chr14G009100, Chr21G009270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G332600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG027340, gene_TRIDC3BG032550 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G193600.1, TraesCS3B02G224200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb009240_P002, Zm00001eb399680_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21630 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.2746, evm.TU.LG08.404, evm.TU.LG08.405 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g04140, gene.Posoc04g21740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.141 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9195 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17475 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.87 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004794 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11637 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2793 |
| Salicaceae | Populus euphratica | 1 | populus_peu21099 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641665 |
| Solanaceae | Solanum chilense | 1 | SOLCI005484900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020382 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1584 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1351 |
| Zosteraceae | Zostera marina | 2 | Zosma03g01760.v3.1, Zosma04g19260.v3.1 |