Basic Information
Locus ID:
Zosma03g00360.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 434957 | 435622 | - | Zosma03g00360.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 26,168.25 Da | 46.43 | 78.05 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 172 | 215 | 1.3E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 153 | 219 | 2.68E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 219 | 5.8E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 173 | 214 | 5.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 173 | 215 | 11.987676 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48030.2 | - | 0 |
| RefSeq | XP_020581461.1 | - | 0 |
| Q7X843 | RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PVH1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26583 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13624, Sbi_jg1407, Sbi_jg52269 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg20498, Seu_jg3331, Seu_jg9580 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005455 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl55767, Sgl60975, Sgl72806, Sgl73728, Sgl73751, Sgl76345 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2119 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00360.v3.1 |