Basic Information
Locus ID:
Zosma02g25510.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Short Name:
TIR1
Description:
Protein TRANSPORT INHIBITOR RESPONSE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 39724761 | 39726701 | - | Zosma02g25510.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 66,024.96 Da | 42.31 | 93.22 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 80 | 126 | 3.5E-20 | IPR041101 |
| Pfam | PF18511 | F-box | 23 | 60 | 7.3E-13 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 21 | 54 | 6.28E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 69 | 551 | 2.49E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 60 | 593 | 2.1E-165 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 59 | 1.2E-12 | - |
| SMART | SM00367 | LRR_CC_2 | 143 | 168 | 3.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 118 | 142 | 88.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 327 | 350 | 290.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 496 | 520 | 21.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 387 | 411 | 5.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 447 | 470 | 130.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_039113798.1 | - | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9NLC3 | Auxin signaling F-box 2 OS=Zostera marina OX=29655 GN=ZOSMA_8G00250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology