Basic Information
Locus ID:
Zosma02g24860.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
MADS-box transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 39405374 | 39406908 | + | Zosma02g24860.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 22,691.01 Da | 53.72 | 83.20 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 70 | 1.48533E-40 | IPR033896 |
| Pfam | PF01486 | K-box region | 87 | 170 | 5.3E-20 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 2.0E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 78 | 7.98E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 75 | 2.3E-27 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 8.8E-40 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 86 | 176 | 12.369617 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.365765 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 9.4E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 9.4E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 9.4E-31 | IPR002100 |
| Coils | Coil | Coil | 123 | 143 | - | - |
| Coils | Coil | Coil | 149 | 169 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45650.1 | AGAMOUS-like 6. sequence suggests this encodes a MADS-box transcription factor | 0 |
| RefSeq | XP_026461003.1 | - | 0 |
| F6I457 | Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9NLX4 | MADS-box transcription factor AG OS=Zostera marina OX=29655 GN=ZOSMA_89G00440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology