Basic Information
Locus ID:
Zosma02g21700.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 37953839 | 37956348 | - | Zosma02g21700.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 64,084.29 Da | 32.84 | 89.56 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 32 | 193 | 3.17013E-91 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 391 | 573 | 6.22197E-87 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 29 | 197 | 6.0E-34 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 226 | 342 | 3.6E-22 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 437 | 561 | 3.1E-16 | IPR011766 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 221 | 368 | 5.89E-33 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 28 | 205 | 7.58E-45 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 390 | 585 | 4.47E-42 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 216 | 378 | 5.0E-42 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 383 | 575 | 1.0E-55 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 25 | 202 | 2.2E-60 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 24 | 585 | 4.1E-207 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_030930393.1 | - | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9Q4U5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology