Basic Information
Locus ID:
Zosma02g20290.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 37252084 | 37253180 | + | Zosma02g20290.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 34,604.22 Da | 46.21 | 71.93 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 56 | 94 | 4.85377E-15 | - |
| CDD | cd03829 | Sina | 172 | 300 | 1.37987E-62 | - |
| Pfam | PF03145 | Seven in absentia protein family | 100 | 299 | 4.4E-78 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 51 | 98 | 2.23E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 111 | 303 | 2.68E-44 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 166 | 2.2E-16 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 167 | 299 | 3.2E-37 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 39 | 109 | 5.0E-7 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 111 | 171 | 13.775948 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 58 | 94 | 9.287877 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_052176689.1 | E3 ubiquitin-protein ligase DIS1 [Diospyros lotus] | 0 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NMM2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology