Basic Information
Locus ID:
Zosma02g17790.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 35467197 | 35473927 | - | Zosma02g17790.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 147,219.31 Da | 47.44 | 71.65 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 803 | 832 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 914 | 950 | 2.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 956 | 992 | 0.074 | IPR001680 |
| Pfam | PF01133 | Enhancer of rudimentary | 274 | 369 | 3.3E-36 | IPR000781 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 802 | 1144 | 8.9E-52 | IPR036322 |
| SUPERFAMILY | SSF143875 | ERH-like | 274 | 369 | 3.66E-39 | IPR035912 |
| Gene3D | G3DSA:3.30.2260.10 | Enhancer of rudimentary | 275 | 374 | 7.0E-36 | IPR035912 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 107 | 274 | 2.5E-14 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 772 | 850 | 5.5E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 860 | 1156 | 2.0E-51 | IPR015943 |
| SMART | SM00320 | WD40_4 | 793 | 833 | 2.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1044 | 1087 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 953 | 992 | 5.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 994 | 1033 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1088 | 1129 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 910 | 950 | 1.5E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 917 | 953 | 11.391954 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 801 | 834 | 9.704691 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 801 | 842 | 11.678087 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 917 | 959 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 959 | 993 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 959 | 993 | 12.446706 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 937 | 951 | - | IPR019775 |
| ProSitePatterns | PS01290 | Enhancer of rudimentary signature. | 324 | 340 | - | IPR000781 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 820 | 834 | 2.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 979 | 993 | 2.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 937 | 951 | 2.3E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 770 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 861 | 880 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 861 | 892 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1182 | 1204 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010907750.1 | WD repeat-containing protein 44 isoform X1 [Elaeis guineensis] | 0 |
| Q96319 | Enhancer of rudimentary homolog OS=Arabidopsis thaliana OX=3702 GN=At5g10810 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9PE97 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7810 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17811 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031802 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g044170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19279, Sbi_jg43844 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18073 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014555 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl65670, Sgl69986 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012729, gene:ENSEOMG00000020099 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0001180, CQ.Regalona.r1.2BG0002250 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G012250 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707433, gene-LOC103710450 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G23755 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10810.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016011m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB05g026420.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2470 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G2652, Cgl04G2697 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g08650 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0019s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g24920 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1542 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003480 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32534 |
| Poaceae | Echinochloa crus-galli | 5 | AH07.2572, BH07.2378, BH09.1644, CH07.2455, CH09.1774 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0137160, gene-QOZ80_2BG0192770 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0178810.1, HORVU.MOREX.r3.6HG0593680.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023561, gene-QYE76_044874 |
| Poaceae | Oryza coarctata | 3 | Oco03G015110, Oco04G015590, Oco07G009810 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g39830.1, LOC_Os04g42134.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G193500, gene-BS78_06G149600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302230, Pt_Chr0302267 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G008370, Chr15G009870, Chr30G009940 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G425000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG051480, gene_TRIDC2BG054670 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G355000.1, TraesCS2B02G373500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb078360_P001, Zm00001eb184500_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18559 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13872, Zma_g16653 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.2569, evm.TU.LG17.1611, evm.TU.LG18.348 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g19080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1226 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-6861, nbisL1-mrna-6925 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17703, nbisL1-mrna-7326 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22580 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000004l.360, evm.TU.utg000005l.64 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004064, Maker00008589 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1016, nbisL1-mrna-16359 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18050 |
| Salicaceae | Populus euphratica | 2 | populus_peu04670, populus_peu13015 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609435 |
| Solanaceae | Solanum chilense | 1 | SOLCI006906300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028676 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6415 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17790.v3.1 |