Basic Information
Locus ID:
Zosma02g16750.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 34623565 | 34635477 | - | Zosma02g16750.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 131,428.80 Da | 39.99 | 80.42 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 912 | 945 | 0.0049 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 451 | 486 | 4.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 516 | 794 | 7.51E-11 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 412 | 1043 | 4.76E-46 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 972 | 1181 | 4.03E-9 | IPR036322 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 217 | 503 | 5.49E-16 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 728 | 959 | 1.7E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 319 | 507 | 6.1E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 508 | 685 | 8.4E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 963 | 1117 | 2.2E-5 | IPR015943 |
| SMART | SM00320 | WD40_4 | 863 | 903 | 0.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 489 | 530 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 822 | 860 | 30.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 7.5E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 533 | 576 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 906 | 945 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 445 | 486 | 7.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 579 | 619 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 998 | 1040 | 3.1 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 4.6E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 400 | 439 | 49.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 378 | 0.7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 913 | 947 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 913 | 954 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 452 | 491 | 8.65015 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 452 | 495 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.070324 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.943626 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 473 | 487 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_010943652.1 | - | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q3F1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology