Basic Information
Locus ID:
Zosma02g15870.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 34048884 | 34050423 | - | Zosma02g15870.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 37,278.40 Da | 42.30 | 73.98 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 248 | 312 | 4.95498E-18 | - |
| CDD | cd16872 | ARID_HMGB9-like | 20 | 104 | 5.58534E-44 | - |
| Pfam | PF09011 | HMG-box domain | 245 | 315 | 6.8E-12 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 23 | 104 | 4.6E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 22 | 114 | 1.44E-29 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 245 | 317 | 4.58E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 232 | 321 | 1.3E-18 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 12 | 117 | 3.6E-27 | IPR036431 |
| SMART | SM00501 | bright_3 | 18 | 109 | 9.8E-31 | IPR001606 |
| SMART | SM01014 | ARID_2 | 14 | 104 | 6.2E-29 | - |
| SMART | SM00398 | hmgende2 | 247 | 316 | 7.4E-12 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 248 | 315 | 14.648644 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 17 | 108 | 25.366575 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 253 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_020532247.1 | - | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P688 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology