Basic Information
Locus ID:
Zosma02g14760.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 32227341 | 32370729 | + | Zosma02g14760.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 493,846.56 Da | 43.84 | 90.25 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3319 | 3452 | 1.3E-8 | IPR009543 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 558 | 773 | 3.8E-27 | IPR031642 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 374 | 1.6E-62 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2217 | 2364 | 5.4E-11 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 108 | 1.2E-30 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1985 | 2150 | 1.4E-9 | IPR009291 |
| SUPERFAMILY | SSF50729 | PH domain-like | 790 | 905 | 9.42E-8 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 788 | 905 | 1.4E-5 | IPR011993 |
| SMART | SM00233 | PH_update | 792 | 905 | 1.2E-4 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 791 | 903 | 9.3517 | IPR001849 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_017699200.2 | uncharacterized protein LOC103710761 isoform X1 [Phoenix dactylifera] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7MUK2 | uncharacterized protein LOC103710761 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103710761 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology