Basic Information
Locus ID:
Zosma02g12590.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 27452613 | 27453708 | - | Zosma02g12590.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 14,187.67 Da | 32.91 | 70.98 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00722 | Glycosyl hydrolases family 16 | 1 | 41 | 1.1E-7 | IPR000757 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 2 | 41 | 1.3E-8 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 36 | 95 | 3.31E-7 | IPR011009 |
| Gene3D | G3DSA:2.60.120.200 | - | 1 | 47 | 5.1E-9 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63930.2 | - | 0 |
| RefSeq | XP_034678827.1 | - | 0 |
| Q9LVP0 | Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana OX=3702 GN=At5g63930 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PD07 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_14G002950 |
| Brassicaceae | Brassica nigra | 1 | BniB01g044820.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007702 |
| Poaceae | Echinochloa crus-galli | 4 | CH01.1911, CH06.2806, CH06.3125, CH06.822 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G005110 |
| Zosteraceae | Zostera marina | 5 | Zosma02g12200.v3.1, Zosma02g12590.v3.1, Zosma03g11790.v3.1 ... |