Basic Information
Locus ID:
Zosma02g09650.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 15765348 | 15766817 | - | Zosma02g09650.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 44,640.78 Da | 50.59 | 81.56 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 126 | 210 | 2.0E-15 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 123 | 218 | 2.75E-24 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 102 | 233 | 5.0E-23 | IPR036431 |
| SMART | SM01014 | ARID_2 | 119 | 210 | 2.9E-20 | - |
| SMART | SM00501 | bright_3 | 123 | 215 | 1.2E-21 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 122 | 214 | 22.966646 | IPR001606 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010241376.1 | - | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PY68 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology