halophFGD

Basic Information

Locus ID: Zosma02g06640.v3.1

Species & Taxonomic ID: Zostera marina & 29655

Genome Assembly: GCA_001185155.1

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr02	5251356	5251654	+	Zosma02g06640.v3.1

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.52	7,469.31 Da	45.81	81.77	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	9	45	2.75E-5	IPR036322
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	12	42	8.870959	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14546 (U3 small nucleolar RNA-associated protein 5)

Pathway:

ko03008 (Ribosome biogenesis in eukaryotes) map03008 (Ribosome biogenesis in eukaryotes)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G11240.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_030441092.1	-
TrEMBL	A0A0K9PMF8	-

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Zosteraceae	Zostera marina	2	Zosma02g06640.v3.1, Zosma02g06670.v3.1