Basic Information
Locus ID:
Zosma02g03040.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 2913067 | 2915100 | + | Zosma02g03040.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 47,859.49 Da | 44.07 | 53.89 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 30 | 75 | 1.69305E-9 | - |
| Pfam | PF13639 | Ring finger domain | 29 | 75 | 7.6E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 23 | 77 | 5.65E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 80 | 9.1E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 30 | 74 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 30 | 75 | 11.825393 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 323 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05545.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_038974067.1 | - | 0 |
| Q5Z8R1 | E3 ubiquitin-protein ligase IPI1 OS=Oryza sativa subsp. japonica OX=39947 GN=IPI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PDZ6 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Zosteraceae | Zostera marina | 2 | Zosma02g03040.v3.1, Zosma557g00010.v3.1 |