Basic Information
Locus ID:
Zosma02g02820.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 2791262 | 2792299 | - | Zosma02g02820.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 37,336.10 Da | 51.29 | 70.00 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 158 | 201 | 1.45389E-18 | - |
| Pfam | PF13639 | Ring finger domain | 158 | 201 | 2.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 153 | 208 | 8.83E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 206 | 7.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 159 | 200 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 159 | 201 | 12.754832 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 242 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008796281.3 | E3 ubiquitin-protein ligase Os04g0590900 [Phoenix dactylifera] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9PBY0 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology