Basic Information
Locus ID:
Zosma02g02500.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 2592513 | 2594525 | - | Zosma02g02500.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 37,704.79 Da | 48.29 | 75.51 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 201 | 329 | 1.76453E-62 | - |
| CDD | cd16571 | RING-HC_SIAHs | 85 | 123 | 2.55128E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 129 | 328 | 9.3E-80 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 86 | 129 | 1.01E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 140 | 332 | 3.73E-46 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 139 | 1.6E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 195 | 2.1E-16 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 196 | 328 | 3.8E-38 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 87 | 123 | 9.582937 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 140 | 200 | 14.006327 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_039127948.1 | E3 ubiquitin-protein ligase SINAT2-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q371 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_120G00050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology