Basic Information
Locus ID:
Zosma02g00200.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 289829 | 308521 | + | Zosma02g00200.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 71,515.57 Da | 42.48 | 96.59 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 372 | 579 | 1.0E-43 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 108 | 363 | 2.0E-63 | IPR024729 |
| Gene3D | G3DSA:3.10.20.90 | - | 169 | 283 | 2.6E-37 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 284 | 385 | 4.8E-16 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_021689564.1 | - | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PXG2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 4 | pistato.v30052220, pistato.v30053190, pistato.v30054840 ... |
| Apiaceae | Apium graveolens | 1 | Ag1G00610 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G17586 |
| Poaceae | Oryza coarctata | 1 | Oco21G007500 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132640125, gene-LOC132640126, gene-LOC132640127 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI002249300 |
| Zosteraceae | Zostera marina | 1 | Zosma02g00200.v3.1 |