Basic Information
Locus ID:
Zosma02g00170.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 216810 | 256882 | + | Zosma02g00170.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 59,390.40 Da | 56.20 | 86.04 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 204 | 474 | 2.35046E-131 | - |
| CDD | cd00121 | MATH | 61 | 187 | 1.11395E-23 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 206 | 468 | 1.5E-37 | IPR001394 |
| Pfam | PF00917 | MATH domain | 75 | 189 | 3.8E-8 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 59 | 190 | 1.18E-26 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 201 | 473 | 1.12E-78 | IPR038765 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 55 | 202 | 2.0E-33 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 203 | 494 | 1.7E-74 | - |
| SMART | SM00061 | math_3 | 61 | 168 | 7.6E-4 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 59 | 187 | 23.433712 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 206 | 515 | 35.039158 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 446 | 463 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 207 | 222 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.3 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021892553.1 | - | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1D1YFQ3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology