Basic Information
Locus ID:
Zosma01g42490.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 42296373 | 42297800 | + | Zosma01g42490.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 51,402.21 Da | 45.88 | 72.40 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 197 | 232 | 0.085 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 147 | 438 | 1.37E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 245 | 445 | 1.7E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 104 | 244 | 4.6E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 330 | 372 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 286 | 325 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 232 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 280 | 6.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 199 | 241 | 9.138305 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020683338.2 | - | 0 |
| TrEMBL | A0A0K9PEL2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g08570 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g20470 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g13010 |
| Zosteraceae | Zostera marina | 2 | Zosma01g42490.v3.1, Zosma06g01650.v3.1 |