Basic Information
Locus ID:
Zosma01g41420.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
MADS-box transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 41730713 | 41732338 | - | Zosma01g41420.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.93 | 22,660.97 Da | 55.56 | 82.64 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 70 | 4.90032E-39 | IPR033896 |
| Pfam | PF01486 | K-box region | 84 | 170 | 1.3E-17 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 1.9E-25 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 75 | 3.4E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 76 | 2.1E-26 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 2.0E-38 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.01532 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 86 | 176 | 11.332889 | IPR002487 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 7.6E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 7.6E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 7.6E-30 | IPR002100 |
| Coils | Coil | Coil | 142 | 176 | - | - |
| Coils | Coil | Coil | 86 | 106 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45660.1 | AGAMOUS-like 20. Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA. | 0 |
| RefSeq | XP_026385965.1 | - | 0 |
| Q93XH4 | Agamous-like MADS-box protein MADS1 OS=Vitis vinifera OX=29760 GN=MADS1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9NNF2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology