Basic Information
Locus ID:
Zosma01g40080.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 40994680 | 40998272 | + | Zosma01g40080.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 115,091.91 Da | 50.34 | 58.30 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 687 | 724 | 0.0011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 646 | 682 | 5.4E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 840 | 860 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 535 | 567 | 2.1E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 529 | 863 | 1.02E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 632 | 893 | 8.1E-50 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 520 | 630 | 3.7E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 770 | 817 | 9.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 726 | 765 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 644 | 682 | 1.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 819 | 860 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 568 | 8.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 685 | 724 | 1.6E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 651 | 691 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 536 | 577 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 691 | 725 | 11.049229 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 536 | 569 | 11.312864 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 691 | 725 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 840 | 860 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 651 | 685 | 11.075592 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 669 | 683 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 669 | 683 | 5.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 711 | 725 | 5.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 555 | 569 | 5.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 964 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 612 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 965 | 984 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 902 | 997 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 509 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010907750.1 | WD repeat-containing protein 44 isoform X1 [Elaeis guineensis] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NWY1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology