Basic Information
Locus ID:
Zosma01g38490.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 40002700 | 40004767 | + | Zosma01g38490.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 28,541.62 Da | 37.24 | 76.91 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 3 | 256 | 5.49688E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 56 | 93 | 3.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 225 | 256 | 0.0028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 138 | 172 | 2.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 20 | 49 | 4.4E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 256 | 3.92E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 103 | 5.3E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 104 | 256 | 1.3E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 176 | 215 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 135 | 173 | 9.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 10 | 49 | 6.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 53 | 93 | 2.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 256 | 0.0012 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 17 | 49 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 60 | 102 | 11.210233 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 142 | 182 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 224 | 256 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 17 | 49 | 9.941962 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 60 | 96 | 9.045603 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 224 | 256 | 12.657402 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021907456.1 | - | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PKA5 | Putative WD-repeat protein OS=Zostera marina OX=29655 GN=ZOSMA_215G00410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology