Basic Information
Locus ID:
Zosma01g37050.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 39265302 | 39266985 | - | Zosma01g37050.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 46,224.81 Da | 40.07 | 84.70 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 65 | 391 | 7.3E-88 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 28 | 417 | 1.51E-119 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 21 | 419 | 1.1E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 223 | 244 | 2800.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 276 | 297 | 860.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 339 | 360 | 9300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 305 | 326 | 4200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 196 | 222 | 29.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 173 | 193 | 7000.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 253 | 266 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_020087271.1 | - | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PPD2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology