Basic Information
Locus ID:
Zosma01g37020.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 39239555 | 39257636 | + | Zosma01g37020.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 76,152.74 Da | 54.17 | 67.06 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 21 | 50 | 3.07453E-4 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 486 | 655 | 2.5E-50 | IPR011545 |
| Pfam | PF00397 | WW domain | 20 | 50 | 1.8E-6 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 12 | 50 | 7.47E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 445 | 669 | 8.69E-71 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 437 | 674 | 1.0E-85 | IPR027417 |
| SMART | SM00487 | ultradead3 | 481 | 684 | 9.6E-64 | IPR014001 |
| SMART | SM00456 | ww_5 | 19 | 52 | 3.6E-6 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 493 | 667 | 31.358101 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 18 | 52 | 11.644501 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 462 | 490 | 9.33766 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 613 | 621 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 24 | 50 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 246 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.2 | - | 0 |
| RefSeq | XP_042990052.1 | DEAD-box ATP-dependent RNA helicase 46 [Carya illinoinensis] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PRG2 | RNA helicase OS=Zostera marina OX=29655 GN=ZOSMA_193G00430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology