Basic Information
Locus ID:
Zosma01g36610.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 38953514 | 38954098 | - | Zosma01g36610.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 21,882.66 Da | 54.37 | 88.40 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 88 | 147 | 2.4E-10 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 151 | 7.34E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 154 | 1.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 89 | 146 | 2.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 89 | 147 | 11.146755 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62690.1 | AtL5. Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | 0 |
| RefSeq | XP_029122219.1 | E3 ubiquitin-protein ligase ATL4 [Elaeis guineensis] | 0 |
| Q9LZJ6 | RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9P8B6 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_36G00230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 5 | Ah024091, Ah024096, Ah024100, Ah024103, Ah028031 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g106860 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51260, Sgl56564 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000034526, gene:ENSEOMG00000035380 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0013220 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30983 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG03.1865 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37240 |
| Zosteraceae | Zostera marina | 1 | Zosma01g36610.v3.1 |