halophFGD

Basic Information

Locus ID: Zosma01g35560.v3.1

Species & Taxonomic ID: Zostera marina & 29655

Genome Assembly: GCA_001185155.1

Description: eukaryotic translation initiation factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr01	38081775	38086313	-	Zosma01g35560.v3.1

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.73	127,399.14 Da	38.76	85.91	-0.64

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd03703	aeIF5B_II	768	875	5.67264E-51	-
CDD	cd16266	IF2_aeIF5B_IV	1005	1100	1.69333E-29	-
CDD	cd01887	IF2_eIF5B	545	755	1.45125E-83	-
Pfam	PF00009	Elongation factor Tu GTP binding domain	546	753	3.3E-33	IPR000795
Pfam	PF03144	Elongation factor Tu domain 2	781	858	4.3E-10	IPR004161
Pfam	PF11987	Translation-initiation factor 2	880	983	7.4E-23	IPR023115
SUPERFAMILY	SSF52156	Initiation factor IF2/eIF5b, domain 3	867	997	1.1E-35	IPR036925
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	543	833	7.73E-64	IPR027417
SUPERFAMILY	SSF50447	Translation proteins	1001	1133	1.98E-30	IPR009000
Gene3D	G3DSA:2.40.30.10	Translation factors	765	885	9.5E-51	-
Gene3D	G3DSA:2.40.30.10	Translation factors	997	1133	5.9E-59	-
Gene3D	G3DSA:3.40.50.10050	-	886	990	3.4E-39	IPR036925
Gene3D	G3DSA:3.40.50.300	-	537	764	1.9E-70	IPR027417
TIGRFAM	TIGR00231	small_GTP: small GTP-binding protein domain	547	671	2.3E-16	IPR005225
ProSiteProfiles	PS51722	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	542	758	48.510201	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	662	671	1.2E-7	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	546	559	1.2E-7	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	610	620	1.2E-7	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	626	637	1.2E-7	IPR000795
MobiDBLite	mobidb-lite	consensus disorder prediction	138	154	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	369	384	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	125	181	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	83	103	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	504	534	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	344	446	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	394	425	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	478	537	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	72	103	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	426	443	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	35	-	-
Coils	Coil	Coil	258	318	-	-
Coils	Coil	Coil	203	240	-	-
Coils	Coil	Coil	111	131	-	-

Gene Ontology

Molecular Function:

GO:0003924 (GTPase activity) GO:0005525 (GTP binding)

KEGG Pathway

KO Term:

K02703 (photosystem II P680 reaction center D1 protein [EC:1.10.3.9])

Pathway:

ko00195 (Photosynthesis) map00195 (Photosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Module:

M00161 (Photosystem II)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G76810.1	eukaryotic translation initiation factor 2 (eIF-2) family protein.
RefSeq	XP_008808243.2	eukaryotic translation initiation factor 5B-like [Phoenix dactylifera]
Swiss-Prot	Q10251	Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC56F8.03 PE=1 SV=1
TrEMBL	A0A0K9P454	Eukaryotic translation initiation factor 5B OS=Zostera marina OX=29655 GN=ZOSMA_39G00430 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg6070
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15301, gene_245
Amaranthaceae	Atriplex hortensis	3	Ah003421, Ah018262, Ah018421
Amaranthaceae	Beta vulgaris	3	BVRB_3g050350, BVRB_7g173810, BVRB_9g202210
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg14893, Sbi_jg28723, Sbi_jg2920, Sbi_jg31007 ... Sbi_jg31009, Sbi_jg55702
Amaranthaceae	Salicornia europaea	7	Seu_jg22981, Seu_jg22982, Seu_jg26226, Seu_jg6833 ... Seu_jg6939, Seu_jg6940, Seu_jg6959
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00004375, GOSA_00004376, GOSA_00017916
Amaranthaceae	Suaeda glauca	2	Sgl01135, Sgl06220
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000003077, gene:ENSEOMG00000021883 ... gene:ENSEOMG00000022784, gene:ENSEOMG00000031997, gene:ENSEOMG00000044257
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0006900, CQ.Regalona.r1.3AG0006930
Anacardiaceae	Pistacia vera	1	pistato.v30037970
Apiaceae	Apium graveolens	6	Ag3G00748, Ag3G00749, Ag3G01911, Ag4G02445, Ag4G02446 ... Ag7G00454
Arecaceae	Cocos nucifera	2	COCNU_14G000450, scaffold033353G000040
Arecaceae	Phoenix dactylifera	2	gene-LOC103720357, gene-LOC103721040
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.1583.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G06402, Ftri12G27292, Ftri9G10744
Brassicaceae	Arabidopsis thaliana	5	AT1G21160.1, AT1G76720.1, AT1G76810.1, AT1G76820.1 ... AT2G27700.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10006634m.g.v1.0, Thhalv10018018m.g.v1.0 ... Thhalv10021382m.g.v1.0, Thhalv10022147m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g31970.v2.2
Brassicaceae	Brassica nigra	4	BniB02g016020.2N, BniB02g016030.2N, BniB03g009000.2N ... BniB05g073240.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1632
Casuarinaceae	Casuarina glauca	1	Cgl08G1673
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g04590
Dunaliellaceae	Dunaliella salina	1	Dusal.0041s00031.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g24390
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.718
Plantaginaceae	Plantago ovata	8	Pov_00011481, Pov_00011596, Pov_00011597, Pov_00011598 ... Pov_00012015, Pov_00015017, Pov_00015018, Pov_00023099
Plumbaginaceae	Limonium bicolor	2	Lb2G10385, Lb3G16650
Poaceae	Echinochloa crus-galli	6	AH05.3560, BH05.1205, BH05.3558, CH01.2697, CH05.1503 ... CH05.3712
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0360980, gene-QOZ80_5AG0391570 ... gene-QOZ80_5BG0409430, gene-QOZ80_5BG0439620
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0094710.1
Poaceae	Lolium multiflorum	2	gene-QYE76_015006, gene-QYE76_042706
Poaceae	Oryza coarctata	3	Oco02G013470, Oco09G018380, Oco10G018310
Poaceae	Oryza sativa	4	LOC_Os01g40150.1, LOC_Os01g40170.1, LOC_Os05g51500.1 ... LOC_Os12g31880.1
Poaceae	Paspalum vaginatum	3	gene-BS78_08G078500, gene-BS78_08G078600 ... gene-BS78_09G258100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0505892, Pt_Chr0703558
Poaceae	Sporobolus alterniflorus	11	Chr01G016380, Chr04G015670, Chr04G024780, Chr06G016320 ... Chr06G016340, Chr06G016350, Chr07G023610, Chr0G020300, Chr0G030010, Chr12G020410, Chr18G015880
Poaceae	Thinopyrum elongatum	4	Tel1E01G740900, Tel1E01G741100, Tel1E01G742100 ... Tel7E01G813100
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG064300, gene_TRIDC1BG073510 ... gene_TRIDC7AG066570, gene_TRIDC7BG060760
Poaceae	Triticum aestivum	6	TraesCS1A02G438600.2, TraesCS1B02G472500.1 ... TraesCS1D02G446400.1, TraesCS1D02G446900.2, TraesCS7A02G479800.2, TraesCS7B02G382100.1
Poaceae	Zea mays	1	Zm00001eb345280_P001
Poaceae	Zoysia japonica	2	nbis-gene-13527, nbis-gene-48615
Poaceae	Zoysia macrostachya	2	Zma_g25096, Zma_g27484
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.629, evm.TU.LG03.129, evm.TU.LG03.17 ... evm.TU.LG04.140, evm.TU.LG04.143
Posidoniaceae	Posidonia oceanica	1	gene.Posoc08g14760
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_8_RagTag.1614
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-19623, nbisL1-mrna-8731
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-402, nbisL1-mrna-8952
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-15078, nbisL1-mrna-15079, nbisL1-mrna-8068 ... nbisL1-mrna-8069
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000018l.50, evm.TU.utg000023l.36
Rhizophoraceae	Kandelia obovata	1	Maker00003101
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-19721, nbisL1-mrna-9392
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-23779
Salicaceae	Populus euphratica	5	populus_peu00417, populus_peu18706, populus_peu18723 ... populus_peu29630, populus_peu29631
Solanaceae	Lycium barbarum	1	gene-LOC132636476
Solanaceae	Solanum chilense	2	SOLCI001496400, SOLCI003795700
Solanaceae	Solanum pennellii	4	gene-LOC107014299, gene-LOC107014401, gene-LOC107017076 ... gene-LOC107023346
Tamaricaceae	Reaumuria soongarica	2	STRG.5392_chr02_+, gene_17626
Tamaricaceae	Tamarix chinensis	1	TC03G1943
Zosteraceae	Zostera marina	4	Zosma01g35560.v3.1, Zosma04g20870.v3.1, Zosma277g00050.v3.1 ... Zosma277g00060.v3.1