Basic Information
Locus ID:
Zosma01g35410.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin-protein ligase XBOS33
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 37979565 | 37982509 | + | Zosma01g35410.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 54,816.63 Da | 46.05 | 81.61 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 224 | 247 | 4.4E-4 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 1.8E-12 | - |
| Pfam | PF00023 | Ankyrin repeat | 111 | 130 | 0.029 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 181 | 206 | 4.7E-5 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 313 | 377 | 1.06E-6 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 276 | 1.3E-44 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 8 | 144 | 6.3E-31 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 149 | 285 | 1.9E-19 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 302 | 379 | 1.6E-7 | IPR013083 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.1E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 7.5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 2.1E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 255 | 0.0017 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.3 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 247 | 9.754822 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 247 | 9.778029 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.932349 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.34544 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 11.674439 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 318 | 370 | 9.332136 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 208 | 11.028328 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 8.95002 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.230433 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 333 | 342 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 482 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_010255493.1 | PREDICTED: E3 ubiquitin-protein ligase XBAT33-like isoform X2 [Nelumbo nucifera] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9P3M9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology