Basic Information
Locus ID:
Zosma01g34280.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 37170758 | 37238504 | + | Zosma01g34280.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 373,171.22 Da | 41.99 | 92.56 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 1854 | 1962 | 9.81307E-7 | - |
| CDD | cd00821 | PH | 42 | 139 | 0.00396892 | - |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1464 | 1601 | 1.5E-10 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 2463 | 2653 | 1.1E-15 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1213 | 1378 | 3.0E-12 | IPR009291 |
| Pfam | PF00168 | C2 domain | 1853 | 1962 | 2.6E-5 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 1852 | 1963 | 1.08E-7 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 1838 | 2001 | 2.9E-7 | IPR035892 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 1833 | 1973 | 9.391947 | IPR000008 |
| ProSiteProfiles | PS50003 | PH domain profile. | 34 | 144 | 6.7866 | IPR001849 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.2 | - | 0 |
| RefSeq | XP_038986982.1 | uncharacterized protein LOC103722332 isoform X1 [Phoenix dactylifera] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PUX1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology