Basic Information
Locus ID:
Zosma01g32410.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 35866176 | 35873359 | - | Zosma01g32410.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 87,786.99 Da | 50.49 | 51.98 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 326 | 366 | 8.88311E-26 | - |
| CDD | cd00371 | HMA | 379 | 438 | 3.92172E-13 | IPR006121 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 325 | 370 | 4.0E-16 | - |
| Pfam | PF00403 | Heavy-metal-associated domain | 380 | 432 | 1.6E-14 | IPR006121 |
| SUPERFAMILY | SSF55008 | HMA, heavy metal-associated domain | 375 | 440 | 3.8E-16 | IPR036163 |
| SUPERFAMILY | SSF57850 | RING/U-box | 326 | 372 | 2.99E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 310 | 375 | 1.6E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.70.100 | - | 376 | 438 | 9.0E-19 | - |
| SMART | SM00184 | ring_2 | 327 | 365 | 3.9E-4 | IPR001841 |
| ProSiteProfiles | PS50846 | Heavy-metal-associated domain profile. | 383 | 439 | 12.330261 | IPR006121 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 327 | 366 | 11.840146 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 661 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022138033.1 | - | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PPE6 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_18G00390 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology