Basic Information
Locus ID:
Zosma01g28950.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 33466074 | 33490295 | - | Zosma01g28950.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 100,019.98 Da | 41.18 | 87.00 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 4 | 196 | 4.48323E-94 | - |
| Pfam | PF09382 | RQC domain | 402 | 497 | 1.1E-19 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 216 | 322 | 3.2E-21 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 18 | 175 | 8.1E-19 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 547 | 612 | 1.5E-12 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 336 | 397 | 4.8E-10 | IPR032284 |
| Pfam | PF14493 | Helix-turn-helix domain | 657 | 752 | 7.0E-15 | IPR029491 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 395 | 496 | 4.76E-21 | IPR036390 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 55 | 337 | 4.05E-55 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 543 | 617 | 4.58E-14 | IPR010997 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 543 | 619 | 5.7E-14 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 398 | 2.2E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 2 | 195 | 2.0E-72 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 399 | 521 | 2.7E-28 | IPR036388 |
| SMART | SM00956 | RQC_2 | 404 | 515 | 1.4E-16 | IPR018982 |
| SMART | SM00487 | ultradead3 | 11 | 205 | 8.1E-31 | IPR014001 |
| SMART | SM00341 | hrdc7 | 544 | 624 | 4.7E-4 | IPR002121 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 2.1E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 5 | 456 | 3.4E-150 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 23 | 189 | 24.800343 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 544 | 624 | 16.689833 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 213 | 368 | 19.302551 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 790 | 804 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 774 | 804 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_039129091.1 | - | 0 |
| Q9CL21 | ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9P8X4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology