Basic Information
Locus ID:
Zosma01g28610.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 33218152 | 33219662 | + | Zosma01g28610.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 40,886.10 Da | 47.94 | 71.03 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 285 | 347 | 4.76787E-13 | - |
| CDD | cd16872 | ARID_HMGB9-like | 67 | 152 | 1.42494E-47 | - |
| Pfam | PF09011 | HMG-box domain | 283 | 351 | 1.7E-8 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 69 | 152 | 1.6E-17 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 271 | 356 | 2.75E-17 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 63 | 158 | 5.76E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 269 | 360 | 1.7E-15 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 57 | 171 | 1.1E-27 | IPR036431 |
| SMART | SM00398 | hmgende2 | 284 | 352 | 2.7E-7 | IPR009071 |
| SMART | SM01014 | ARID_2 | 62 | 152 | 5.7E-28 | - |
| SMART | SM00501 | bright_3 | 66 | 157 | 5.0E-27 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 285 | 351 | 10.832296 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 65 | 156 | 26.012711 | IPR001606 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_042520116.1 | - | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P8Z9 | AT-rich interactive domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_31G00740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology