Basic Information
Locus ID:
Zosma01g27830.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
RecQ zinc-binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 32536302 | 32546556 | - | Zosma01g27830.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 169,916.70 Da | 50.79 | 77.85 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 227 | 422 | 4.40631E-97 | - |
| CDD | cd18794 | SF2_C_RecQ | 423 | 556 | 1.97979E-56 | - |
| Pfam | PF16124 | RecQ zinc-binding | 559 | 628 | 9.2E-11 | IPR032284 |
| Pfam | PF14383 | DUF761-associated sequence motif | 703 | 731 | 1.6E-14 | IPR032795 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 235 | 403 | 4.7E-16 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 438 | 546 | 1.9E-14 | IPR001650 |
| Pfam | PF14309 | Domain of unknown function (DUF4378) | 1366 | 1507 | 2.1E-24 | IPR025486 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 273 | 567 | 9.7E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 198 | 422 | 6.2E-83 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 423 | 631 | 5.5E-59 | IPR027417 |
| SMART | SM00490 | helicmild6 | 465 | 547 | 3.7E-21 | IPR001650 |
| SMART | SM00487 | ultradead3 | 229 | 431 | 5.3E-26 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 227 | 631 | 3.0E-152 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 241 | 415 | 21.71323 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 437 | 590 | 18.346504 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 967 | 998 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1150 | 1165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1132 | 1165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 981 | 998 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_020698268.1 | - | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9P2J1 | VARLMGL domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_41G00220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology