Basic Information
Locus ID:
Zosma01g27200.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 31957789 | 31960228 | + | Zosma01g27200.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 50,952.40 Da | 44.61 | 77.72 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 104 | 419 | 1.3E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 69 | 459 | 1.7E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 56 | 457 | 2.6E-118 | IPR012334 |
| SMART | SM00710 | pbh1 | 342 | 363 | 900.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 313 | 334 | 0.18 | IPR006626 |
| SMART | SM00710 | pbh1 | 283 | 303 | 4900.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 260 | 281 | 130.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 233 | 259 | 55.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 290 | 303 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_039126868.1 | - | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9Q1K9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology