Basic Information
Locus ID:
Zosma01g25450.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 30423121 | 30424503 | - | Zosma01g25450.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 49,853.45 Da | 71.38 | 57.26 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 232 | 273 | 8.0358E-23 | - |
| Pfam | PF13639 | Ring finger domain | 231 | 273 | 1.1E-9 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 16 | 46 | 1.3E-11 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 329 | 431 | 1.4E-38 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 212 | 282 | 1.04E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 279 | 4.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 232 | 272 | 3.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 232 | 273 | 12.149959 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 443 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_042509999.1 | E3 ubiquitin-protein ligase RDUF1-like [Macadamia integrifolia] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NMJ4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology