Basic Information
Locus ID:
Zosma01g25140.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 30195878 | 30199202 | + | Zosma01g25140.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 75,505.23 Da | 38.94 | 92.60 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 268 | 310 | 5.2272E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 434 | 471 | 7.5E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 474 | 512 | 4.7E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 556 | 595 | 2.7E-4 | IPR000225 |
| Pfam | PF04564 | U-box domain | 264 | 332 | 2.7E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 391 | 430 | 5.1E-11 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 339 | 9.27E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 362 | 637 | 5.76E-49 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 263 | 336 | 2.8E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 350 | 538 | 2.2E-41 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 19 | 131 | 2.4E-10 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 539 | 657 | 2.1E-12 | IPR011989 |
| SMART | SM00185 | arm_5 | 473 | 513 | 9.7 | IPR000225 |
| SMART | SM00185 | arm_5 | 555 | 595 | 170.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 267 | 330 | 5.2E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 514 | 554 | 61.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 432 | 472 | 0.0048 | IPR000225 |
| SMART | SM00185 | arm_5 | 391 | 431 | 3.9E-7 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 443 | 485 | 9.502399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 263 | 337 | 44.256802 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 402 | 444 | 13.9474 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 689 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_010922355.1 | protein spotted leaf 11 [Elaeis guineensis] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PZF9 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_128G00190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology